In addition to its procoagulant and anticoagulant roles in the blood coagul
ation cascade, thrombin works as a signaling molecule when it interacts wit
h the G-protein coupled receptors PAR1, PAR3, and PAR4. We have mapped the
thrombin epitopes responsible for these interactions using enzymatic assays
and Ala scanning mutagenesis. The epitopes overlap considerably, and are a
lmost identical to those of fibrinogen and fibrin, but a few unanticipated
differences are uncovered that help explain the higher (90-fold) specificit
y of PAR1 relative to PAR3 and PAR4. The most critical residues for the int
eraction with the PARs are located around the active site where mutations a
ffect recognition in the order PAR4 > PAR3 > PAR1 Other important residues
for PAR binding cluster in a small area of exosite I where mutations affect
recognition in the order PAR1 > PAR3 > PAR4. Owing to this hierarchy of ef
fects, the mutation W215A selectively compromises PAR4 cleavage, whereas th
e mutation R67A abrogates the higher specificity of PAR1 relative to PAR3 a
nd PAR4. 3D models of thrombin complexed with PAR1, PAR3, and PAR4 are cons
tructed and account for the perturbations documented by the mutagenesis stu
dies. (C) 2001 Wiley-Liss, Inc.